Alumni
This person is a member of Sanger Institute Alumni.
My research interests revolve mostly around formal logic and data representation, with an enthusiasm for programming language semantics — particularly functional programming — and its mathematical underpinnings. From a pragmatic perspective, I am involved in library/API development, general purpose software engineering and Internet infrastucture (mostly at the application layer). I write code largely in C, JavaScript, Python and Haskell and am a staunch advocate of the open source movement. Correspondingly, I strongly believe in open access and transparency in all walks of life, not limited to software and science.
In no particular order, I have worked on the following tools and projects (amongst other things):
- 13amp: CRAM-to-BAM translation virtual filesystem
- xiongxiong: Bearer token codec library
- tbd: tarbomb disposal
- hypr: Hypermedia systems for true RESTfulness
- Cookie Monster: Sequencing data triage system