SNP-sites
Finds SNP sites from a multi-FASTA alignment file.
A software application for rapidly extracting SNPs from a multi-FASTA alignment.
Downloads
Please see our GitHub page for download and installation instructions.
Further information
For more information and advice on using this software please see our GitHub page.
SNP-sites is available under GPL3.
If you make use of this software in your research, please cite as:
“SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments”, Andrew J. Page, Ben Taylor, Aidan J. Delaney, Jorge Soares, Torsten Seemann, Jacqueline A. Keane, Simon R. Harris, Microbial Genomics 2(4), (2016)
Contact
If you need help or have any queries, please contact us using the details below.
If you need help or have any queries, please contact us using the details below.
- Email: path-help@sanger.ac.uk
Our normal office hours are 8:30-17:00 (GMT) Monday to Friday.
Sanger Institute Contributors
Previous contributors
Dr Simon Harris
Senior Staff Scientist
Dr Andrew Page
Principal Computer Programmer