Gap5
Gap5 is a DNA sequence assembly visualiser and editing tool.
About Gap5
Input and outputs supported include SAM, BAM and CRAM file formats along with the less used formats CAF and ACE.
Gap5 is part of the Staden Package, a broad set of software tools originally developed for many years by Rodger Staden at the MRC Laboratory of Molecular Biology, Cambridge UK.
The Template Display showing read pairs, their mean insert size, orientation, template and read depth and annotations.
The Gap5 Contig Editor showing sequence differences.
Downloads
Go to the https://sourceforge.net/projects/staden/ project page and follow the links to files -> staden. (https://sourceforge.net/projects/staden/files/staden/).
Gap5 is one of the tools included in the Staden Package.
Further information
BSD Open Source License.
Contact
If you need help or have any queries, please contact us using the details below.
James Bonfield jkb@sanger.ac.uk
Sanger Institute Contributors
James Bonfield
Principal Software Developer
Andrew Whitwham
Senior Software Developer